Stem-loop vvi-MIR397a

Accession

MI0007956

Description

Vitis vinifera vvi-MIR397a precursor miRNA

Literature search

5 open access papers mention vvi-MIR397a
(15 sentences)

Sequence

244865 reads, 911.0 reads per million, 198 experiments

gaagaaaacaUCAUUGAGUGCAGCGUUGAUGaaacugaaguauuccauuuuucagcuucuuugaaguccggcaagauggguucugguugauuccaUUGGCGCUGCACUCAAUCAUGUc
.......((((.(((((((((((((((((((.((.(.((.((.((((((((((.(((((...)))))..)).))))))))...)).)).))).))))))))))))))))))).)))).

Structure

gaagaaa    C                   a  c g  g  --u        -  -a     u 
       acaU AUUGAGUGCAGCGUUGAUG aa u aa ua   uccauuuu uc  gcuuc  
       |||| ||||||||||||||||||| || | || ||   |||||||| ||  ||||| u
       UGUA UAACUCACGUCGCGGUUac uu a uu gu   ggguagaa gg  ugaag  
------c    C                   c  - g  g  cuu        c  cc     u 

Annotation confidence High

Genome context

gb|CP126657.1|: 4837158-4837275 [+]

Mature vvi-miR397a-5p

• Accession: MIMAT0006561
• Description: Vitis vinifera vvi-miR397a-5p mature miRNA
• Sequence: 11 - UCAUUGAGUGCAGCGUUGAUG - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR397a-3p

• Accession: MIMAT0055881
• Description: Vitis vinifera vvi-miR397a-3p mature miRNA
• Sequence: 96 - UUGGCGCUGCACUCAAUCAUGU - 117
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558