Stem-loop vvi-MIR166h

Accession

MI0006514

Description

Vitis vinifera vvi-MIR166h precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

8 open access papers mention vvi-MIR166h
(17 sentences)

Sequence

2307564 reads, 154729 reads per million, 2 experiments

aacaguugaggggaacgcugucugguucgagaccacucgcuucaaguacagacauaaucugaaugaucUCGGACCAGGCUUCAUUCCCCccaacucaaca
...(((((.((((((.(..(((((((((((((.((.(((......((....))......))).)).)))))))))))))..).)))))).))))).....

Structure

--aac     a      c cu             c  c   cuucaa  a 
     aguug ggggaa g  gucugguucgaga ca ucg      gu c
     ||||| |||||| |  ||||||||||||| || |||      ||  
     ucaac CCCCUU C  CGGACCAGGCUcu gu agu      ca a
acaac     c      A UU             a  a   cuaaua  g 

Annotation confidence Not enough data

Genome context

chr5: 6741188-6741287 [-]

Mature vvi-miR166h

• Accession: MIMAT0005669
• Description: Vitis vinifera vvi-miR166h mature miRNA
• Sequence: 69 - UCGGACCAGGCUUCAUUCCCC - 89
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558