Stem-loop vvi-MIR166h

Accession

MI0006514

Description

Vitis vinifera vvi-MIR166h precursor miRNA

Literature search

8 open access papers mention vvi-MIR166h
(15 sentences)

Sequence

277167201 reads, 853588.0 reads per million, 226 experiments

aacaguugaggGGAACGCUGUCUGGUUCGAGAccacucgcuucaaguacagacauaaucugaaugaucUCGGACCAGGCUUCAUUCCCCccaacucaaca
...(((((.((((((.(..(((((((((((((.((.(((......((....))......))).)).)))))))))))))..).)))))).))))).....

Structure

--aac     a      C CU             c  c   cuucaa  a 
     aguug ggGGAA G  GUCUGGUUCGAGA ca ucg      gu c
     ||||| |||||| |  ||||||||||||| || |||      ||  
     ucaac CCCCUU C  CGGACCAGGCUcu gu agu      ca a
acaac     c      A UU             a  a   cuaaua  g 

Annotation confidence High

Genome context

gb|CP126652.1|: 6914132-6914231 [-]

Mature vvi-miR166h-5p

• Accession: MIMAT0055799
• Description: Vitis vinifera vvi-miR166h-5p mature miRNA
• Sequence: 12 - GGAACGCUGUCUGGUUCGAGA - 32
• Evidence: experimental ; unknown

Mature vvi-miR166h-3p

• Accession: MIMAT0005669
• Description: Vitis vinifera vvi-miR166h-3p mature miRNA
• Sequence: 69 - UCGGACCAGGCUUCAUUCCCC - 89
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558