Stem-loop vvi-MIR395h

Accession

MI0006563

Description

Vitis vinifera vvi-MIR395h precursor miRNA

Literature search

6 open access papers mention vvi-MIR395h
(23 sentences)

Sequence

7106 reads, 479 reads per million, 2 experiments

guccccuagaguucccuugaccacuucacuggggaccuucucuaauuauaaugacuuccuaCUGAAGUGUUUGGGGGAACUCcuggugcuau
....((..((((((((((((.(((((((.((((((...((............)).)))))).))))))).))))))))))))..))......

Structure

--gucc  ua            c       c      ccu  ucuaa 
      cc  gaguucccuuga cacuuca ugggga   uc     u
      ||  |||||||||||| ||||||| ||||||   ||      
      gg  CUCAAGGGGGUU GUGAAGU auccuu   ag     u
uaucgu  uc            U       C      --c  uaaua 

Annotation confidence Not enough data

Genome context

chr1: 6566652-6566743 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from vvi-MIR395h

Mature vvi-miR395h

• Accession: MIMAT0005718
• Description: Vitis vinifera vvi-miR395h mature miRNA
• Sequence: 62 - CUGAAGUGUUUGGGGGAACUC - 82
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558