Stem-loop vvi-MIR390

Accession

MI0006552

Description

Vitis vinifera vvi-MIR390 precursor miRNA

Literature search

4 open access papers mention vvi-MIR390
(19 sentences)

Sequence

253530 reads, 1037.0 reads per million, 223 experiments

agaaucuguuAAGCUCAGGAGGGAUAGCGCCaugagccaugaugaaaaugauuguugaguugaaaauuuuuucuagcuuguuuuuugggucaucauuuuguguguguggCGCUAUCUAUCCUGAGUUUCAcggguucuuc
(((((((((.((((((((((.((((((((((((..((((.(((((...(((((..((((((((((....)))).)))))).......)))))))))).)).))..)))))))))))).)))))))))).)))))))))..

Structure

--         u          G            ga  -  u     aaa     -----gu      -    a 
  agaaucugu AAGCUCAGGA GGAUAGCGCCau  gc ca gauga   ugauu       ugaguu gaaa u
  ||||||||| |||||||||| ||||||||||||  || || |||||   |||||       |||||| ||||  
  ucuugggcA UUUGAGUCCU UCUAUCGCggug  ug gu uuacu   acugg       guucga cuuu u
cu         C          A            ug  u  u     ---     guuuuuu      u    u 

Annotation confidence High

Genome context

gb|CP126653.1|: 8172842-8172981 [+]

Mature vvi-miR390-5p

• Accession: MIMAT0005707
• Description: Vitis vinifera vvi-miR390-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCGCC - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR390-3p

• Accession: MIMAT0055835
• Description: Vitis vinifera vvi-miR390-3p mature miRNA
• Sequence: 110 - CGCUAUCUAUCCUGAGUUUCA - 130
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558