Stem-loop vvi-MIR167b

Accession

MI0006516

Description

Vitis vinifera vvi-MIR167b precursor miRNA

Literature search

7 open access papers mention vvi-MIR167b
(12 sentences)

Sequence

6607266 reads, 14742.0 reads per million, 225 experiments

caauagcaguUGAAGCUGCCAGCAUGAUCUAagcuuuucuguugcccacccuuucuccaggaaagacuAGAUCAUGUGGCAGUUUCACCUGuugaugga
((.((((((.(((((((((((.(((((((((..((((((((................))))))))..)))))))))))))))))))).)))))).))..

Structure

--  a      u           G         ag        uugccca 
  ca uagcag UGAAGCUGCCA CAUGAUCUA  cuuuucug       c
  || |||||| ||||||||||| |||||||||  ||||||||        
  gu guuGUC ACUUUGACGGU GUACUAGAu  gaaaggac       c
ag  a      C           -         ca        cucuuuc 

Annotation confidence Medium

Genome context

gb|CP126661.1|: 7139238-7139336 [+]

Mature vvi-miR167b-5p

• Accession: MIMAT0005671
• Description: Vitis vinifera vvi-miR167b-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUA - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR167b-3p

• Accession: MIMAT0055801
• Description: Vitis vinifera vvi-miR167b-3p mature miRNA
• Sequence: 69 - AGAUCAUGUGGCAGUUUCACCUG - 91
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558