Stem-loop vvi-MIR408

Accession

MI0006578

Description

Vitis vinifera vvi-MIR408 precursor miRNA

Literature search

5 open access papers mention vvi-MIR408
(17 sentences)

Sequence

2736191 reads, 6179.0 reads per million, 209 experiments

aagaggaagaCGGGGACGAGGUAGUGCAUGGauggaacuauuaacagaagaauguuaagcuguuuuugcucuacccAUGCACUGCCUCUUCCCUGGCucugucucuc
.(((((.(((((((((.((((((((((((((.((((.(....(((((............)))))...).)))).)))))))))))))).))))))..))).))))).

Structure

a     a   --      C              a    a uauu     aagaa 
 agagg aga  CGGGGA GAGGUAGUGCAUGG ugga c    aacag     u
 ||||| |||  |||||| |||||||||||||| |||| |    |||||      
 ucucu ucu  GUCCCU CUCCGUCACGUAcc aucu g    uuguc     g
c     g   CG      U              c    c -uuu     gaauu 

Annotation confidence High

Genome context

gb|CP126654.1|: 5392426-5392532 [+]

Mature vvi-miR408-5p

• Accession: MIMAT0055861
• Description: Vitis vinifera vvi-miR408-5p mature miRNA
• Sequence: 11 - CGGGGACGAGGUAGUGCAUGG - 31
• Evidence: experimental ; unknown

Mature vvi-miR408-3p

• Accession: MIMAT0005733
• Description: Vitis vinifera vvi-miR408-3p mature miRNA
• Sequence: 77 - AUGCACUGCCUCUUCCCUGGC - 97
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558