Stem-loop vvi-MIR398a

Accession

MI0006572

Description

Vitis vinifera vvi-MIR398a precursor miRNA

Literature search

4 open access papers mention vvi-MIR398a
(9 sentences)

Sequence

51671 reads, 280.0 reads per million, 191 experiments

acaccccaagGGAGUGGCACCUGAGAACACCGGuuguguuggcugcgccaagcucugcuagcuaaugcauuuUGUGUUCUCAGGUCACCCCUUuggggcacca
...(((((((((.(((..((((((((((((.((.(((((((((((.((........))))))))))))).)).))))))))))))))).))))))))).....

Structure

--aca         A   GC            C  u           c  caa 
     ccccaagGG GUG  ACCUGAGAACAC GG uguguuggcug gc   g
     ||||||||| |||  |||||||||||| || ||||||||||| ||    
     gggguUUCC CAC  UGGACUCUUGUG uu acguaaucgau cg   c
accac         C   --            U  u           -  ucu 

Annotation confidence High

Genome context

gb|CP126648.1|: 727773-727875 [+]

Mature vvi-miR398a-5p

• Accession: MIMAT0055855
• Description: Vitis vinifera vvi-miR398a-5p mature miRNA
• Sequence: 11 - GGAGUGGCACCUGAGAACACCGG - 33
• Evidence: experimental ; unknown

Mature vvi-miR398a-3p

• Accession: MIMAT0005727
• Description: Vitis vinifera vvi-miR398a-3p mature miRNA
• Sequence: 73 - UGUGUUCUCAGGUCACCCCUU - 93
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558