Stem-loop vvi-MIR156f

Accession

MI0006490

Description

Vitis vinifera vvi-MIR156f precursor miRNA

Literature search

13 open access papers mention vvi-MIR156f
(95 sentences)

Sequence

10617182 reads, 12148.0 reads per million, 224 experiments

uuauguucugUUGACAGAAGAUAGAGAGCACaacugaacauacccaagagggcuuguguuugagcagucuuguCCUCUCUCUUCUCCUGUCAACAgaacuugcug
....(((((((((((((.(((.((((((.(((((((..((.((.((((....)))).)).))..))))..))).))))))..))).)))))))))))))......

Structure

--uuau             A   -U      C   --    aa  u  c    a 
      guucugUUGACAG AGA  AGAGAG ACa  acug  ca ac caag g
      ||||||||||||| |||  |||||| |||  ||||  || || ||||  
      caagACAACUGUC UCU  UCUCUC ugu  ugac  gu ug guuc g
gucguu             C   UC      C   uc    ga  u  u    g 

Annotation confidence High

Genome context

gb|CP126661.1|: 26677591-26677695 [+]

Mature vvi-miR156f-5p

• Accession: MIMAT0005645
• Description: Vitis vinifera vvi-miR156f-5p mature miRNA
• Sequence: 11 - UUGACAGAAGAUAGAGAGCAC - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR156f-3p

• Accession: MIMAT0055782
• Description: Vitis vinifera vvi-miR156f-3p mature miRNA
• Sequence: 74 - CCUCUCUCUUCUCCUGUCAACA - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558