Stem-loop vvi-MIR166b

Accession

MI0006508

Description

Vitis vinifera vvi-MIR166b precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

8 open access papers mention vvi-MIR166b
(18 sentences)

Sequence

2196710 reads, 147294 reads per million, 2 experiments

guuuuuugaggggaauguuggcuggcucgaggcauucacauaagaagaagauauauaagugaaggugUCGGACCAGGCUUCAUUCCucucaaauauaca
((..(((((((((((((..(.((((.((((.((.(((((...................))))).)).)))).)))).)..)))))))))))))...)).

Structure

-  -uu             uu g    c    g  a     auaagaag 
 gu   uuugaggggaaug  g cugg ucga gc uucac        a
 ||   |||||||||||||  | |||| |||| || |||||        a
 ca   aaacucuCCUUAC  C GACC GGCU ug aagug        g
a  uau             UU G    A    g  g     aauauaua 

Annotation confidence Not enough data

Genome context

chr12: 17937398-17937496 [+]

Mature vvi-miR166b

• Accession: MIMAT0005663
• Description: Vitis vinifera vvi-miR166b mature miRNA
• Sequence: 68 - UCGGACCAGGCUUCAUUCC - 86
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558