Stem-loop vvi-MIR171c

Accession

MI0006538

Description

Vitis vinifera vvi-MIR171c precursor miRNA

Literature search

7 open access papers mention vvi-MIR171c
(23 sentences)

Sequence

2370332 reads, 6438.0 reads per million, 213 experiments

ugguauuacgGGAUAUUGGUGCGGUUCAAUAagaaagcagugcucgcaaucuuuuugaguucugguuuuUGAUUGAGCCGUGCCAAUAUCacgugucauugcu
......((((.(((((((((((((((((((.(((((.(((.(((((.((....))))))).))).))))).))))))))))))))))))).))))........

Structure

--ugguau    G                   A     g   u     c  u 
        uacg GAUAUUGGUGCGGUUCAAU agaaa cag gcucg aa c
        |||| ||||||||||||||||||| ||||| ||| ||||| ||  
        gugc CUAUAACCGUGCCGAGUUA Uuuuu guc ugagu uu u
ucguuacu    a                   G     g   u     -  u 

Annotation confidence Medium

Genome context

gb|CP126659.1|: 5529371-5529473 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR171c

Mature vvi-miR171c-5p

• Accession: MIMAT0055822
• Description: Vitis vinifera vvi-miR171c-5p mature miRNA
• Sequence: 11 - GGAUAUUGGUGCGGUUCAAUA - 31
• Evidence: experimental ; unknown

Mature vvi-miR171c-3p

• Accession: MIMAT0005693
• Description: Vitis vinifera vvi-miR171c-3p mature miRNA
• Sequence: 70 - UGAUUGAGCCGUGCCAAUAUC - 90
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558