Stem-loop vvi-MIR399g

Accession

MI0006576

Description

Vitis vinifera vvi-MIR399g precursor miRNA

Literature search

4 open access papers mention vvi-MIR399g
(9 sentences)

Sequence

56143 reads, 567.0 reads per million, 124 experiments

augaauugcuGGGCAAUACUCCAUUGGCAGUUGGccacucggcugaccgcgguugacuucacaaguagcagacuaagcucacUGCCAAAGGAGAUUUGCCCCUcaauucagcu
.(((((((..((((((..((((.((((((((.(((...((.((((...(.((......)).)...)))).))....))).)))))))).))))..))))))..)))))))...

Structure

--a       cu      UA    A        U   -cac  g    acc c  uu 
   ugaauug  GGGCAA  CUCC UUGGCAGU GGc    uc gcug   g gg  g
   |||||||  ||||||  |||| |||||||| |||    || ||||   | ||   
   acuuaac  CCCGUU  GAGG AACCGUca ucg    ag cgau   c cu  a
ucg       UC      UA    A        c   aauc  a    gaa a  uc 

Annotation confidence High

Genome context

gb|CP126657.1|: 8081379-8081491 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from vvi-MIR399g

Mature vvi-miR399g-5p

• Accession: MIMAT0055859
• Description: Vitis vinifera vvi-miR399g-5p mature miRNA
• Sequence: 11 - GGGCAAUACUCCAUUGGCAGUUGG - 34
• Evidence: experimental ; unknown

Mature vvi-miR399g-3p

• Accession: MIMAT0005731
• Description: Vitis vinifera vvi-miR399g-3p mature miRNA
• Sequence: 83 - UGCCAAAGGAGAUUUGCCCCU - 103
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558