Stem-loop vvi-MIR477a

Accession

MI0007970

Description

Vitis vinifera vvi-MIR477a precursor miRNA

Literature search

3 open access papers mention vvi-MIR477a
(3 sentences)

Sequence

111935 reads, 1169.0 reads per million, 173 experiments

gaaguugucaAUCUCCCUCAAAGGCUUCCAAuuuuccuggcugauuaucaagguuggaaaGUUGGAAGACAGUGGGGGACCuuggaagcuuacc
.(((((.((((..(((((((....(((((((((((((.(.((........)).).)))))))))))))....)))))))..)))).)))))...

Structure

--g     g    UC       AAGG             u g  gau 
   aaguu ucaA  UCCCUCA    CUUCCAAuuuucc g cu   u
   ||||| ||||  |||||||    ||||||||||||| | ||    
   uucga gguu  AGGGGGU    GAAGGUUGaaagg u ga   a
cca     a    CC       GACA             u g  acu 

Annotation confidence Medium

Genome context

gb|CP126648.1|: 27509069-27509162 [+]

Mature vvi-miR477a-5p

• Accession: MIMAT0006575
• Description: Vitis vinifera vvi-miR477a-5p mature miRNA
• Sequence: 11 - AUCUCCCUCAAAGGCUUCCAA - 31
• Evidence: experimental ; Array [2]

Mature vvi-miR477a-3p

• Accession: MIMAT0055893
• Description: Vitis vinifera vvi-miR477a-3p mature miRNA
• Sequence: 61 - GUUGGAAGACAGUGGGGGACC - 81
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558