Stem-loop vvi-MIR393b

Accession

MI0006553

Description

Vitis vinifera vvi-MIR393b precursor miRNA

Literature search

4 open access papers mention vvi-MIR393b
(13 sentences)

Sequence

137267 reads, 2505.0 reads per million, 221 experiments

ggaggaggcaUCCAAAGGGAUCGCAUUGAUCccaaacucuccaugucuuuggAUCAUGCUAUCCCUUUGGAUUccuccuuugg
((((((((.((((((((((((.((((.(((((.(((..(.....)..)))))))))))).)))))))))))).))))))))..

Structure

--        c            C    U     c   cu u 
  ggaggagg aUCCAAAGGGAU GCAU GAUCc aaa  c c
  |||||||| |||||||||||| |||| ||||| |||  | c
  uuuccucc UAGGUUUCCCUA CGUA CUAgg uuu  g a
gg        U            U    -     -   cu u 

Annotation confidence Medium

Genome context

gb|CP126660.1|: 4346752-4346834 [+]

Mature vvi-miR393b-5p

• Accession: MIMAT0005708
• Description: Vitis vinifera vvi-miR393b-5p mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUC - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR393b-3p

• Accession: MIMAT0055836
• Description: Vitis vinifera vvi-miR393b-3p mature miRNA
• Sequence: 53 - AUCAUGCUAUCCCUUUGGAUU - 73
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558