Stem-loop vvi-MIR319f

Accession

MI0006550

Description

Vitis vinifera vvi-MIR319f precursor miRNA

Literature search

7 open access papers mention vvi-MIR319f
(26 sentences)

Sequence

2169 reads, 146 reads per million, 2 experiments

agugguuuaagagagcuuccuucaguccacucauggauggguuagggguuuggauuagcugccgacucauucauucaaacacaguagaauggaaauggaguuuacuacugugaaugugugaaugaugcgggagguaaauuucauccuuuucuugucugugcUUGGACUGAAGGGAGCUCCCUucuacuguuuu
(((((...(((.(((((((((((((((((..((((((((((..((((((.....(((.((.(((..((((((((.((..((((((((.................))))))))..)).))))))))..))).)).))).....))))))..))))))))))..))))))))))))))))).)))))))).....

Structure

-----     uuu   a                 cu          uu      uugga   g  g   ac        u  aa        aauggaa 
     agugg   aag gagcuuccuucagucca  cauggauggg  aggggu     uua cu ccg  ucauucau ca  cacaguag       a
     |||||   ||| |||||||||||||||||  ||||||||||  ||||||     ||| || |||  |||||||| ||  ||||||||       u
     ucauc   uUC CUCGAGGGAAGUCAGGU  gugucuguuc  uuccua     aau ga ggc  aguaagug gu  gugucauc       g
uuuug     ---   C                 Uc          uu      cuuua   g  g   gu        u  aa        auuugag 

Annotation confidence Not enough data

Genome context

chr6: 9137255-9137447 [+]

Mature vvi-miR319f

• Accession: MIMAT0005705
• Description: Vitis vinifera vvi-miR319f mature miRNA
• Sequence: 162 - UUGGACUGAAGGGAGCUCCCU - 182
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558