Stem-loop vvi-MIR171i

Accession

MI0006543

Description

Vitis vinifera vvi-MIR171i precursor miRNA

Literature search

4 open access papers mention vvi-MIR171i
(14 sentences)

Sequence

2005419 reads, 5931.0 reads per million, 215 experiments

gaagaagguggggaUGUUGGAAUGGCUCAAUCAAAucaaaucucccaaggguuuuggguccuuuaaucUGAUUGAGCCGUGCCAAUAUCaucauguucacuuc
...(((.((((.((((((((.((((((((((((.((.(((...(((((.....)))))...))).)).)))))))))))).)))))))).)))).))).....

Structure

--gaa   g    g        A            A  c   ucu     g 
     gaa gugg gaUGUUGG AUGGCUCAAUCA Au aaa   cccaa g
     ||| |||| |||||||| |||||||||||| || |||   ||||| g
     cuu uacu CUAUAACC UGCCGAGUUAGU ua uuu   ggguu u
cuuca   g    a        G            c  a   ccu     u 

Annotation confidence High

Genome context

gb|CP126664.1|: 1349514-1349616 [+]

Mature vvi-miR171i-5p

• Accession: MIMAT0055826
• Description: Vitis vinifera vvi-miR171i-5p mature miRNA
• Sequence: 15 - UGUUGGAAUGGCUCAAUCAAA - 35
• Evidence: experimental ; unknown

Mature vvi-miR171i-3p

• Accession: MIMAT0005698
• Description: Vitis vinifera vvi-miR171i-3p mature miRNA
• Sequence: 69 - UGAUUGAGCCGUGCCAAUAUC - 89
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558