Stem-loop vvi-MIR395n

Accession

MI0007954

Description

Vitis vinifera vvi-MIR395n precursor miRNA

Literature search

6 open access papers mention vvi-MIR395n
(23 sentences)

Sequence

3448 reads, 43.0 reads per million, 94 experiments

GGCCUUGAGAGUUCCCCCAACcccuccaguaugaccaucucucuucuucuuuuaauuuguucaucaaaucuucuucuacuaucuauuuccagggugauuuccucuacugaagagucUGGAGGAACUCUUGGUGCCAC
(((.(((((((((((.(((..(.((.(((((.((..(((.((((..............................................)))).)))....))))))).)).)..))).))))))))))).)))..

Structure

--   C           C   AC c  c     u  --cc   u    ucuucuuuuaauuuguucauca 
  GGC UUGAGAGUUCC CCA  c cu cagua ga    auc cucu                      a
  ||| ||||||||||| |||  | || ||||| ||    ||| ||||                       
  CCG GGUUCUCAAGG GGU  g ga gucau cu    uag ggga                      a
CA   U           A   cu a  a     -  ccuu   u    ccuuuaucuaucaucuucuucu 

Annotation confidence High

Genome context

gb|CP126664.1|: 6804025-6804161 [-]

Mature vvi-miR395n-5p

• Accession: MIMAT0055879
• Description: Vitis vinifera vvi-miR395n-5p mature miRNA
• Sequence: 1 - GGCCUUGAGAGUUCCCCCAAC - 21
• Evidence: experimental ; unknown

Mature vvi-miR395n-3p

• Accession: MIMAT0006559
• Description: Vitis vinifera vvi-miR395n-3p mature miRNA
• Sequence: 117 - UGGAGGAACUCUUGGUGCCAC - 137
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558