Stem-loop vvi-MIR169e

Accession

MI0006525

Description

Vitis vinifera vvi-MIR169e precursor miRNA

Literature search

8 open access papers mention vvi-MIR169e
(17 sentences)

Sequence

155886 reads, 866.0 reads per million, 185 experiments

gucuugucugaUAGCCAAGGAUGACUUGCCUGcccuaucccaagugggucaauuucuuucuuuuuuccaaguaguguuugauauuugauauaucaugaauccgguuguuuggguuccaGGCAGUCACCUUGGCUAAuuuuacaggcucu
((((.((..(((((((((((.(((((.(((((.(((((.....)))))..............................((((((.....)))))).((((((((....)))))))))))))))))))))))))).)))..))))))...

Structure

---    u  cu   -        A     U     cccuaucccaagugggucaauuucuuucuuuuuuccaaguaguguuugauauuugauauaucau        u 
   gucu gu  gaU AGCCAAGG UGACU GCCUG                                                                gaauccgg u
   |||| ||  ||| |||||||| ||||| |||||                                                                ||||||||  
   cgga ca  uuA UCGGUUCC ACUGA CGGac                                                                cuuggguu g
ucu    -  uu   A        -     -     ----------------------------------------------------------------        u 

Annotation confidence High

Genome context

gb|CP126661.1|: 24989643-24989791 [-]

Mature vvi-miR169e-5p

• Accession: MIMAT0005680
• Description: Vitis vinifera vvi-miR169e-5p mature miRNA
• Sequence: 12 - UAGCCAAGGAUGACUUGCCUG - 32
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR169e-3p

• Accession: MIMAT0061476
• Description: Vitis vinifera vvi-miR169e-3p mature miRNA
• Sequence: 119 - GGCAGUCACCUUGGCUAA - 136
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558