Stem-loop vvi-MIR156a

Accession

MI0006485

Description

Vitis vinifera vvi-MIR156a precursor miRNA

Literature search

13 open access papers mention vvi-MIR156a
(101 sentences)

Sequence

34177 reads, 119.0 reads per million, 107 experiments

agaaauauguUGACAGAAGAGAGGGAGCACaacccagcaucagcuaaagacucuuugcuuuucuugggaguguGCUCUCUCUUCUUCUGUCAUCaucacacucc
......(((.(((((((((((((((((((((.(((((.(..(((.((((...)))))))..).)))))..))))))))))).)))))))))).)))........

Structure

--agaaau   u          -           -a     c uc   u    a 
        aug UGACAGAAGA GAGGGAGCACa  cccag a  agc aaag  
        ||| |||||||||| |||||||||||  ||||| |  ||| |||| c
        uaC ACUGUCUUCU CUCUCUCGugu  ggguu u  ucg uuuc  
ccucacac   U          U           ga     c uu   -    u 

Annotation confidence High

Genome context

gb|CP126666.1|: 8768922-8769025 [-]

Mature vvi-miR156a-5p

• Accession: MIMAT0005640
• Description: Vitis vinifera vvi-miR156a-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGGGAGCAC - 30
• Evidence: experimental ; Array [2]

Mature vvi-miR156a-3p

• Accession: MIMAT0055777
• Description: Vitis vinifera vvi-miR156a-3p mature miRNA
• Sequence: 74 - GCUCUCUCUUCUUCUGUCAUC - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558