Stem-loop vvi-MIR482

Accession

MI0007971

Description

Vitis vinifera vvi-MIR482 precursor miRNA

Literature search

8 open access papers mention vvi-MIR482
(16 sentences)

Sequence

6687560 reads, 32958.0 reads per million, 226 experiments

aauguuugggAAUUGGAGAGUAGGAAAGCUUagccaucuauucccuucaugguuuccucuccauggauugggggucuagagcuagUCUUUCCUACUCCUCCCAUUCCuauuguuuuc
......(((((((.((((((((((((((.(((((..((((..((((((((((........))))))....))))..))))))))).)))))))))).)))).)))))))........

Structure

--aauguu       U    -          C     ca    uu    ----      uuu 
        ugggAAU GGAG AGUAGGAAAG UUagc  ucua  cccu    ucaugg   c
        ||||||| |||| |||||||||| |||||  ||||  ||||    ||||||    
        auCCUUA CCUC UCAUCCUUUC gaucg  agau  gggg    gguacc   c
cuuuuguu       C    C          U     --    cu    guua      ucu 

Annotation confidence High

Genome context

gb|CP126664.1|: 5919195-5919311 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from vvi-MIR482

Mature vvi-miR482-5p

• Accession: MIMAT0055894
• Description: Vitis vinifera vvi-miR482-5p mature miRNA
• Sequence: 11 - AAUUGGAGAGUAGGAAAGCUU - 31
• Evidence: experimental ; unknown

Mature vvi-miR482-3p

• Accession: MIMAT0006576
• Description: Vitis vinifera vvi-miR482-3p mature miRNA
• Sequence: 86 - UCUUUCCUACUCCUCCCAUUCC - 107
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558