Stem-loop vvi-MIR160c

Accession

MI0006498

Description

Vitis vinifera vvi-MIR160c precursor miRNA

Literature search

4 open access papers mention vvi-MIR160c
(13 sentences)

Sequence

239166 reads, 615.0 reads per million, 206 experiments

aaauggguugUGCCUGGCUCCCUGUAUGCCAcacguagagaccacucccuuucccggauuggcuauuugcgggugGCGUGCGAGGAGCCAAGCAUAcccaccauuc
...(((((.((((.(((((((.((((((((((.((((((..(((.(((.......))).)))...)))))).)))))))))).))))))).)))))))))......

Structure

---aaa     u    C       C          a      -ga   c   cu 
      ugggu gUGC UGGCUCC UGUAUGCCAc cguaga   cca ucc  u
      ||||| |||| ||||||| |||||||||| ||||||   ||| |||  u
      acccA UACG ACCGAGG GCGUGCGgug gcguuu   ggu agg  c
cuuacc     -    A       A          g      auc   u   cc 

Annotation confidence High

Genome context

gb|CP126657.1|: 16773607-16773712 [+]

Mature vvi-miR160c-5p

• Accession: MIMAT0005653
• Description: Vitis vinifera vvi-miR160c-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR160c-3p

• Accession: MIMAT0055788
• Description: Vitis vinifera vvi-miR160c-3p mature miRNA
• Sequence: 76 - GCGUGCGAGGAGCCAAGCAUA - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558