Stem-loop vvi-MIR156e

Accession

MI0006489

Description

Vitis vinifera vvi-MIR156e precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

11 open access papers mention vvi-MIR156e
(94 sentences)

Sequence

71 reads, 5 reads per million, 2 experiments

guaugguaggUGACAGAGGAGAGUGAGCACucaugguucuuuucuugcaugaaguuucuaugcuugaagcucugugugcuuacucccuaucugucaccccucaagcau
((.(((..(((((((((((.((((((((((.((.(((....(((..((((((....)).))))..)))))).)).))))))))))))..)))))))))..))).))..

Structure

--  a   ua         --  A          u  u   ucuu   uu    -  a 
  gu ugg  ggUGACAGA  GG GAGUGAGCAC ca ggu    uuc  gcau ga g
  || |||  |||||||||  || |||||||||| || |||    |||  |||| ||  
  cg acu  ccacugucu  cc cucauucgug gu ucg    aag  cgua cu u
ua  a   cc         au  -          u  c   ----   uu    u  u 

Annotation confidence Not enough data

Genome context

chr11: 1504194-1504301 [-]

Mature vvi-miR156e

• Accession: MIMAT0005644
• Description: Vitis vinifera vvi-miR156e mature miRNA
• Sequence: 11 - UGACAGAGGAGAGUGAGCAC - 30
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467