Stem-loop vvi-MIR169u

Accession

MI0006535

Description

Vitis vinifera vvi-MIR169u precursor miRNA

Literature search

8 open access papers mention vvi-MIR169u
(15 sentences)

Sequence

116842 reads, 811.0 reads per million, 196 experiments

aggguggaauUGAGUCAAGGAUGACUUGCCGuuauauauuugcagaagggcacgcaggggccuuuagcuauguguuaccGGCAAGUUGACUUGACUCUGUuuggcccucu
(((((.((((.((((((((...(((((((((..((((((..((..((((((.(....).)))))).)).))))))...)))))))))..)))))))).)))).)))))..

Structure

--     g    U        GAU         -uu      uu  ag      a g 
  agggu gaau GAGUCAAG   GACUUGCCG   auauau  gc  aagggc c c
  ||||| |||| ||||||||   |||||||||   ||||||  ||  |||||| |  
  ucccg uuUG CUCAGUUC   UUGAACGGc   ugugua  cg  uuuccg g a
uc     g    U        -AG         cau      -u  -a      g g 

Annotation confidence High

Genome context

gb|CP126658.1|: 16659727-16659836 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from vvi-MIR169u

Mature vvi-miR169u-5p

• Accession: MIMAT0005690
• Description: Vitis vinifera vvi-miR169u-5p mature miRNA
• Sequence: 11 - UGAGUCAAGGAUGACUUGCCG - 31
• Evidence: experimental ; Array [2]

Mature vvi-miR169u-3p

• Accession: MIMAT0055819
• Description: Vitis vinifera vvi-miR169u-3p mature miRNA
• Sequence: 80 - GGCAAGUUGACUUGACUCUGU - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558