Stem-loop vvi-MIR479

Accession

MI0006579

Description

Vitis vinifera vvi-MIR479 precursor miRNA

Literature search

6 open access papers mention vvi-MIR479
(8 sentences)

Sequence

205091 reads, 746.0 reads per million, 215 experiments

guagacauggUGUGGUAUUGGUUCGGCUCAUCuucuuucauucauuuucaucggcucaaagaCGAGCCGAACCAAUAUCACUCUuguaugcuuc
(((.(((.((.((((((((((((((((((.((((........................)))).)))))))))))))))))).))))).)))...

Structure

---   g   u  U                  A    cuuucauucau 
   gua aca gg GUGGUAUUGGUUCGGCUC UCuu           u
   ||| ||| || |||||||||||||||||| ||||            
   cgu ugu UC CACUAUAACCAAGCCGAG agaa           u
cuu   a   -  U                  C    acucggcuacu 

Annotation confidence High

Genome context

gb|CP126663.1|: 27115967-27116060 [+]

Mature vvi-miR479-5p

• Accession: MIMAT0005734
• Description: Vitis vinifera vvi-miR479-5p mature miRNA
• Sequence: 11 - UGUGGUAUUGGUUCGGCUCAUC - 32
• Evidence: experimental ; Illumina [2]

Mature vvi-miR479-3p

• Accession: MIMAT0055862
• Description: Vitis vinifera vvi-miR479-3p mature miRNA
• Sequence: 63 - CGAGCCGAACCAAUAUCACUCU - 84
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558