Stem-loop vvi-MIR479

Accession

MI0006579

Description

Vitis vinifera vvi-MIR479 precursor miRNA

Literature search

4 open access papers mention vvi-MIR479
(6 sentences)

Sequence

17726 reads, 1190 reads per million, 2 experiments

guagacauggUGUGGUAUUGGUUCGGCUCAUCuucuuucauucauuuucaucggcucaaagacgagccgaaccaauaucacucuuguaugcuuc
(((.(((.((.((((((((((((((((((.((((........................)))).)))))))))))))))))).))))).)))...

Structure

---   g   u  U                  A    cuuucauucau 
   gua aca gg GUGGUAUUGGUUCGGCUC UCuu           u
   ||| ||| || |||||||||||||||||| ||||            
   cgu ugu uc cacuauaaccaagccgag agaa           u
cuu   a   -  u                  c    acucggcuacu 

Annotation confidence Not enough data

Genome context

chr16: 21573759-21573852 [+]

Mature vvi-miR479

• Accession: MIMAT0005734
• Description: Vitis vinifera vvi-miR479 mature miRNA
• Sequence: 11 - UGUGGUAUUGGUUCGGCUCAUC - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558