Stem-loop vvi-MIR169v

Accession

MI0007947

Description

Vitis vinifera vvi-MIR169v precursor miRNA

Literature search

8 open access papers mention vvi-MIR169v
(17 sentences)

Sequence

8101 reads, 72.0 reads per million, 76 experiments

agggaggaacaAAGCCAAGGAUGAAUUGCCGGcgaugaaaguaggcagcuuuguccauggaucGGCAAUUUAUUUCUUGGCUAUGUugggcucucu
((((((.((((.(((((((((((((((((((((.((((((((.....)))))...))).).))))))))))).))))))))).))))...))))))

Structure

      --g    A         -           - g   ---     a 
agggag   aaca AGCCAAGGA UGAAUUGCCGG c aug   aaagu g
||||||   |||| ||||||||| ||||||||||| | |||   ||||| g
ucucuc   uUGU UCGGUUCUU AUUUAACGGcu g uac   uuucg c
      ggg    A         U           a g   cug     a 

Annotation confidence High

Genome context

gb|CP126658.1|: 16716249-16716344 [+]

Mature vvi-miR169v-5p

• Accession: MIMAT0006552
• Description: Vitis vinifera vvi-miR169v-5p mature miRNA
• Sequence: 12 - AAGCCAAGGAUGAAUUGCCGG - 32
• Evidence: experimental ; Array [2]

Mature vvi-miR169v-3p

• Accession: MIMAT0055873
• Description: Vitis vinifera vvi-miR169v-3p mature miRNA
• Sequence: 64 - GGCAAUUUAUUUCUUGGCUAUGU - 86
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558