Stem-loop vvi-MIR394b

Accession

MI0006555

Description

Vitis vinifera vvi-MIR394b precursor miRNA

Literature search

3 open access papers mention vvi-MIR394b
(12 sentences)

Sequence

466675 reads, 2287.0 reads per million, 214 experiments

acagaguuuaUUGGCAUUCUGUCCACCUCCcaucucuugaaaaucucucuuuucucucuguggAGGUGGGCAUACUGCCAACCaagcucuguu
(((((((((.((((((...(((((((((((((......(((((......)))))....)).)))))))))))...))))))..))))))))).

Structure

-         -a      UUC           -  ucucuu     uc 
 acagaguuu  UUGGCA   UGUCCACCUCC ca      gaaaa  u
 |||||||||  ||||||   ||||||||||| ||      |||||   
 ugucucgaa  AACCGU   ACGGGUGGAgg gu      cuuuu  c
u         CC      CAU           u  --cucu     cu 

Annotation confidence High

Genome context

gb|CP126665.1|: 1447356-1447448 [-]

Mature vvi-miR394b-5p

• Accession: MIMAT0005710
• Description: Vitis vinifera vvi-miR394b-5p mature miRNA
• Sequence: 11 - UUGGCAUUCUGUCCACCUCC - 30
• Evidence: not_experimental

Mature vvi-miR394b-3p

• Accession: MIMAT0055838
• Description: Vitis vinifera vvi-miR394b-3p mature miRNA
• Sequence: 64 - AGGUGGGCAUACUGCCAACC - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467