Stem-loop vvi-MIR399h

Accession

MI0006577

Description

Vitis vinifera vvi-MIR399h precursor miRNA

Literature search

4 open access papers mention vvi-MIR399h
(9 sentences)

Sequence

14409 reads, 92.0 reads per million, 149 experiments

aggaauaacaGUGCAAUCCUCCUUUGGCAGAaagaucaugcacaugcauacuucuguuuUGCCAAAGGAGAAUUGCCCUGccauucgcuc
..((((..(((.(((((.(((((((((((((((((..((((....))))...))).)))))))))))))).))))).)))..))))....

Structure

--ag    aa   U     C              -   -uc    a 
    gaau  caG GCAAU CUCCUUUGGCAGAa aga   augc c
    ||||  ||| ||||| |||||||||||||| |||   ||||  
    cuua  GUC CGUUA GAGGAAACCGUuuu ucu   uacg a
cucg    cc   C     A              g   uca    u 

Annotation confidence High

Genome context

gb|CP126657.1|: 8083677-8083766 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from vvi-MIR399h

Mature vvi-miR399h-5p

• Accession: MIMAT0055860
• Description: Vitis vinifera vvi-miR399h-5p mature miRNA
• Sequence: 11 - GUGCAAUCCUCCUUUGGCAGA - 31
• Evidence: experimental ; unknown

Mature vvi-miR399h-3p

• Accession: MIMAT0005732
• Description: Vitis vinifera vvi-miR399h-3p mature miRNA
• Sequence: 60 - UGCCAAAGGAGAAUUGCCCUG - 80
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558