Stem-loop vvi-MIR399c

Accession

MI0007960

Description

Vitis vinifera vvi-MIR399c precursor miRNA

Literature search

5 open access papers mention vvi-MIR399c
(11 sentences)

Sequence

7233 reads, 57.0 reads per million, 157 experiments

accggucucaGGGCCUCUUUCACUUGGUAGGUGacauagaugugaaugaucUGCCAAAGGAGAGUUGCCCUGugucugguua
(((((.(.((((((..(((((..(((((((((.((((....)))..).)))))))))..)))))..)))))).).)))))..

Structure

--     u u      CU     AC         G --   a 
  accgg c caGGGC  CUUUC  UUGGUAGGU a  cau g
  ||||| | ||||||  |||||  ||||||||| |  |||  
  ugguc g GUCCCG  GAGAG  AACCGUcua u  gug a
au     u u      UU     GA         g aa   u 

Annotation confidence High

Genome context

gb|CP126662.1|: 18250355-18250436 [+]

Mature vvi-miR399c-5p

• Accession: MIMAT0055884
• Description: Vitis vinifera vvi-miR399c-5p mature miRNA
• Sequence: 11 - GGGCCUCUUUCACUUGGUAGGUG - 33
• Evidence: experimental ; unknown

Mature vvi-miR399c-3p

• Accession: MIMAT0006565
• Description: Vitis vinifera vvi-miR399c-3p mature miRNA
• Sequence: 52 - UGCCAAAGGAGAGUUGCCCUG - 72
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558