Stem-loop vvi-MIR172b

Accession

MI0006545

Description

Vitis vinifera vvi-MIR172b precursor miRNA

Literature search

9 open access papers mention vvi-MIR172b
(33 sentences)

Sequence

587127 reads, 4902.0 reads per million, 103 experiments

uauugccgAUGCAGCAUCAUCAAGAUUCUcaaccccaaaacuugaggcagcgaagauggcaucgcugccgcgccgggcuuucgcaugUGAAUCUUGAUGAUGCUACACcugcaaacaa
..((((.(.((.((((((((((((((((.((.........((((.((((((((........)))))))).))..)).........)).)))))))))))))))).)).).))))....

Structure

--ua    c A  C                U  accccaaaa  --  a        aga 
    uugc g UG AGCAUCAUCAAGAUUC ca         cu  ug ggcagcga   u
    |||| | || |||||||||||||||| ||         ||  || ||||||||    
    aacg c AC UCGUAGUAGUUCUAAG gu         gg  gc ccgucgcu   g
aaca    u C  A                U  acgcuuucg  cc  g        acg 

Annotation confidence High

Genome context

gb|CP126660.1|: 6262468-6262585 [+]

Mature vvi-miR172b-5p

• Accession: MIMAT0055828
• Description: Vitis vinifera vvi-miR172b-5p mature miRNA
• Sequence: 9 - AUGCAGCAUCAUCAAGAUUCU - 29
• Evidence: experimental ; unknown

Mature vvi-miR172b-3p

• Accession: MIMAT0005700
• Description: Vitis vinifera vvi-miR172b-3p mature miRNA
• Sequence: 88 - UGAAUCUUGAUGAUGCUACAC - 108
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467