Stem-loop vvi-MIR828a

Accession

MI0007972

Description

Vitis vinifera vvi-MIR828a precursor miRNA

Literature search

6 open access papers mention vvi-MIR828a
(12 sentences)

Sequence

183819 reads, 737.0 reads per million, 176 experiments

uauaaaguuUCUUGCUCAAAUGAGUAUUCCAaacaacagcuugugaagcaaugauuacugucauagucucugcauguggauuguuguugAGAUGCUCAUUUGAGGAAGCAAccuuaaaaaug
..(((.(((.(((.((((((((((((((.(((.(((((((((((((.((.(((((....))))).)).)).)))...)).))))))))).)))))))))))))).))).))).)))......

Structure

----ua   a   U   G              C   a      -  ---   -  a  a     u 
      uaa guu CUU CUCAAAUGAGUAUU CAa caacag cu   ugu ga gc augau a
      ||| ||| ||| |||||||||||||| ||| |||||| ||   ||| || || |||||  
      auu cAA GAA GAGUUUACUCGUAG guu guuguu gg   acg cu ug uacug c
guaaaa   c   C   G              A   -      a  ugu   u  c  a     u 

Annotation confidence High

Genome context

gb|CP126663.1|: 27265728-27265849 [+]

Mature vvi-miR828a-5p

• Accession: MIMAT0006577
• Description: Vitis vinifera vvi-miR828a-5p mature miRNA
• Sequence: 10 - UCUUGCUCAAAUGAGUAUUCCA - 31
• Evidence: not_experimental

Mature vvi-miR828a-3p

• Accession: MIMAT0055895
• Description: Vitis vinifera vvi-miR828a-3p mature miRNA
• Sequence: 90 - AGAUGCUCAUUUGAGGAAGCAA - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467