Stem-loop vvi-MIR164d

Accession

MI0006506

Description

Vitis vinifera vvi-MIR164d precursor miRNA

Literature search

5 open access papers mention vvi-MIR164d
(15 sentences)

Sequence

751701 reads, 2137.0 reads per million, 205 experiments

aagcucuugaUGGAGAAGCAGGGCACGUGCAguucacaaauucuaaucugcucugcacgugcaguucacaaauucuaaucugcucugCACGUGCUCCCCUUCUCCAACauggguuccu
.(((((.((.((((((((..((((((((((((..((............((..((((....))))..))............))..))))))))))))..)))))))).)).)))))...

Structure

--a     u  a        CA            uu  caaauucuaauc  cu    a 
   agcuc ug UGGAGAAG  GGGCACGUGCAg  ca            ug  cugc c
   ||||| || ||||||||  ||||||||||||  ||            ||  ||||  
   uuggg aC ACCUCUUC  CUCGUGCACguc  gu            ac  gacg g
ucc     u  A        CC            uc  cuaaucuuaaac  uu    u 

Annotation confidence High

Genome context

gb|CP126661.1|: 1476724-1476841 [-]

Mature vvi-miR164d-5p

• Accession: MIMAT0005661
• Description: Vitis vinifera vvi-miR164d-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR164d-3p

• Accession: MIMAT0055792
• Description: Vitis vinifera vvi-miR164d-3p mature miRNA
• Sequence: 88 - CACGUGCUCCCCUUCUCCAAC - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558