Stem-loop vvi-MIR845e

Accession

MI0007978

Description

Vitis vinifera vvi-MIR845e precursor miRNA

Literature search

4 open access papers mention vvi-MIR845e
(7 sentences)

Sequence

1144 reads, 11.0 reads per million, 151 experiments

agaacgcacauuaauuaucccuAGGGCCAUGGGAUAAACAAAAACcuugaaaaaacaaguuagcacacccuagaaugguucuagcacgauuacuaaccuaUGGCUCUGAUACCAAUUGAUGggaaaaacuc
........((((((((.....((((((((((((............((((......))))..........((((((...))))))............)))))))))))).....))))))))..........

Structure

--agaacgca        auccc            AUAAACAAAAACcuugaaaaaacaaguuagcacacc      u 
          cauuaauu     uAGGGCCAUGGG                                    cuagaa  
          ||||||||     ||||||||||||                                    |||||| g
          GUAGUUAA     GUCUCGGUaucc                                    gaucuu  
cucaaaaagg        CCAUA            ------------------------aaucauuagcac      g 

Annotation confidence Low

Genome context

gb|CP126652.1|: 15091702-15091832 [+]

Mature vvi-miR845e-5p

• Accession: MIMAT0055899
• Description: Vitis vinifera vvi-miR845e-5p mature miRNA
• Sequence: 23 - AGGGCCAUGGGAUAAACAAAAAC - 45
• Evidence: experimental ; unknown

Mature vvi-miR845e-3p

• Accession: MIMAT0006583
• Description: Vitis vinifera vvi-miR845e-3p mature miRNA
• Sequence: 101 - UGGCUCUGAUACCAAUUGAUG - 121
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467