Stem-loop vvi-MIR398c

Accession

MI0007959

Description

Vitis vinifera vvi-MIR398c precursor miRNA

Literature search

2 open access papers mention vvi-MIR398c
(4 sentences)

Sequence

1238388 reads, 2524.0 reads per million, 211 experiments

guguccuacaGGAGUGACCUGAGAAUCACAUGcccgcaucacccaucuuugcucucaUGUGUUCUCAGGUCGCCCCUGcuggacuccc
..((((..((((.((((((((((((.((((((...(((...........)))...)))))))))))))))))).))))..))))....

Structure

--gu    ua    A            U      ccc   ucac 
    gucc  caGG GUGACCUGAGAA CACAUG   gca    c
    ||||  |||| |||||||||||| ||||||   |||    c
    cagg  GUCC CGCUGGACUCUU GUGUac   cgu    a
cccu    uc    C            -      ucu   uucu 

Annotation confidence High

Genome context

gb|CP126653.1|: 18580862-18580949 [+]

Mature vvi-miR398c-5p

• Accession: MIMAT0055883
• Description: Vitis vinifera vvi-miR398c-5p mature miRNA
• Sequence: 11 - GGAGUGACCUGAGAAUCACAUG - 32
• Evidence: experimental ; unknown

Mature vvi-miR398c-3p

• Accession: MIMAT0006564
• Description: Vitis vinifera vvi-miR398c-3p mature miRNA
• Sequence: 58 - UGUGUUCUCAGGUCGCCCCUG - 78
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558