Stem-loop vvi-MIR172d

Accession

MI0006547

Description

Vitis vinifera vvi-MIR172d precursor miRNA

Literature search

9 open access papers mention vvi-MIR172d
(37 sentences)

Sequence

700898 reads, 3113.0 reads per million, 217 experiments

guuagcugAUGCAGCAUCAUCAAGAUUCacacccaauggaagggcagugaugcaaucucugccaaagauuuugagaUGAGAAUCUUGAUGAUGCUGCAUucgcagugaa
....((.(((((((((((((((((((((.((.((((......(((((.(((...))).))))).......))).).)).))))))))))))))))))))).))......

Structure

--guua  u                     a  c -   -uggaag     u   g 
      gc gAUGCAGCAUCAUCAAGAUUC ca c caa       ggcag gau  
      || ||||||||||||||||||||| || | |||       ||||| ||| c
      cg uUACGUCGUAGUAGUUCUAAG GU g guu       ccguc cua  
aaguga  c                     A  a a   uuagaaa     u   a 

Annotation confidence High

Genome context

gb|CP126655.1|: 13831740-13831848 [+]

Mature vvi-miR172d-5p

• Accession: MIMAT0055830
• Description: Vitis vinifera vvi-miR172d-5p mature miRNA
• Sequence: 9 - AUGCAGCAUCAUCAAGAUUC - 28
• Evidence: experimental ; unknown

Mature vvi-miR172d-3p

• Accession: MIMAT0005702
• Description: Vitis vinifera vvi-miR172d-3p mature miRNA
• Sequence: 77 - UGAGAAUCUUGAUGAUGCUGCAU - 99
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558