Stem-loop vvi-MIR395f

Accession

MI0006561

Description

Vitis vinifera vvi-MIR395f precursor miRNA

Literature search

6 open access papers mention vvi-MIR395f
(23 sentences)

Sequence

7055 reads, 475 reads per million, 2 experiments

guacccuagaguuccccugaccacuucacuggggaucuucucuaaugacuucccaCUGAAGUGUUUGGGGGAACUCcuggugucau
(.((((..((((((((((((.(((((((.((((((((.........)).)))))).))))))).))))))))))))..)).)))..

Structure

-- u  -  ua            c       c      -  uuc 
  g ac cc  gaguuccccuga cacuuca ugggga uc   u
  | || ||  |||||||||||| ||||||| |||||| ||   c
  c ug gg  CUCAAGGGGGUU GUGAAGU acccuu ag   u
ua -  u  uc            U       C      c  uaa 

Annotation confidence Not enough data

Genome context

chr1: 6489542-6489627 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR395f

Mature vvi-miR395f

• Accession: MIMAT0005716
• Description: Vitis vinifera vvi-miR395f mature miRNA
• Sequence: 56 - CUGAAGUGUUUGGGGGAACUC - 76
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558