Stem-loop vvi-MIR167d

Accession

MI0006518

Description

Vitis vinifera vvi-MIR167d precursor miRNA

Literature search

7 open access papers mention vvi-MIR167d
(12 sentences)

Sequence

4925947 reads, 10932.0 reads per million, 216 experiments

agggaauaagUGAAGCUGCCAGCAUGAUCUAgcuuuggcuagggauacagagaaagagagagaucagagcuaacccuagcuaGGUCAUGCCCUGACAGCCUCACUccuuccuucu
.(((((..(((((.((((.(((((((((((((((((((((...(((................)))..))))))....)))))))))))))..)).)))).)))))..)))))...

Structure

--a     ua     A    C  --             ----      agg   acagaga 
   gggaa  agUGA GCUG CA  GCAUGAUCUAgcu    uuggcu   gau       a
   |||||  ||||| |||| ||  |||||||||||||    ||||||   |||        
   uccuu  UCACU CGAC GU  CGUACUGGaucga    aaucga   cua       a
ucu     cc     C    A  CC             uccc      -ga   gagagag 

Annotation confidence High

Genome context

gb|CP126654.1|: 844197-844311 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR167d

Mature vvi-miR167d-5p

• Accession: MIMAT0005673
• Description: Vitis vinifera vvi-miR167d-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUA - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR167d-3p

• Accession: MIMAT0055803
• Description: Vitis vinifera vvi-miR167d-3p mature miRNA
• Sequence: 83 - GGUCAUGCCCUGACAGCCUCACU - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558