Stem-loop vvi-MIR164a

Accession

MI0006503

Description

Vitis vinifera vvi-MIR164a precursor miRNA

Literature search

6 open access papers mention vvi-MIR164a
(33 sentences)

Sequence

752149 reads, 2140.0 reads per million, 206 experiments

agcuccuuguUGGAGAAGCAGGGCACGUGCAgauuugccucacuuuucccccuuuuuucuucuuuacucccaccaccgcccacaggcuugCACGUGCUCCCCUUCUCCAACauggguuccu
.((.((.(((((((((((..((((((((((((....((((...........................................))))))))))))))))..))))))))))).))))....

Structure

---a  u  u           CA            auuu    cacuuuucccccuuuuuucu 
    gc cc uguUGGAGAAG  GGGCACGUGCAg    gccu                    u
    || || |||||||||||  ||||||||||||    ||||                    c
    ug gg aCAACCUCUUC  CUCGUGCACguu    cgga                    u
uccu  -  u           CC            ----    cacccgccaccacccucauu 

Annotation confidence High

Genome context

gb|CP126654.1|: 3668431-3668551 [-]

Mature vvi-miR164a-5p

• Accession: MIMAT0005658
• Description: Vitis vinifera vvi-miR164a-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR164a-3p

• Accession: MIMAT0055791
• Description: Vitis vinifera vvi-miR164a-3p mature miRNA
• Sequence: 91 - CACGUGCUCCCCUUCUCCAAC - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558