Stem-loop vvi-MIR160d

Accession

MI0006499

Description

Vitis vinifera vvi-MIR160d precursor miRNA

Literature search

3 open access papers mention vvi-MIR160d
(9 sentences)

Sequence

260052 reads, 697.0 reads per million, 203 experiments

cauacuuacaUGCCUGGCUCCCUGUAUGCCAuuugcaaaguccacccgaggauugguagccuucgcggaugGCGUGCGAGGAGCCAUGCAUGcaucuugcuu
........(((((.(((((((.((((((((((((((.(((.(.(((........))).).))).)))))))))))))).))))))).)))))..........

Structure

--cauacuua     C       C              a   u c   cga 
          caUGC UGGCUCC UGUAUGCCAuuugc aag c acc   g
          ||||| ||||||| |||||||||||||| ||| | |||    
          GUACG ACCGAGG GCGUGCGguaggcg uuc g ugg   g
uucguucuac     U       A              c   c a   uua 

Annotation confidence High

Genome context

gb|CP126655.1|: 14179647-14179748 [+]

Mature vvi-miR160d-5p

• Accession: MIMAT0005654
• Description: Vitis vinifera vvi-miR160d-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR160d-3p

• Accession: MIMAT0055789
• Description: Vitis vinifera vvi-miR160d-3p mature miRNA
• Sequence: 72 - GCGUGCGAGGAGCCAUGCAUG - 92
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558