Stem-loop vvi-MIR166c

Accession

MI0006509

Description

Vitis vinifera vvi-MIR166c precursor miRNA

Literature search

8 open access papers mention vvi-MIR166c
(16 sentences)

Sequence

236837290 reads, 720137.0 reads per million, 226 experiments

cuauuuugaggGGAAUGUUGUCUGGCUCGAGGacacuuaccuuaacuuugauccguuucucuagauccauaucaccuauauauauguauuauuguauuuuuauuuguacugagcauguguuggugucgUCGGACCAGGCUUCAUUCCCCccaauuaucgc
.....(((.((((((((..((((((.((((.((((((............((((..........))))............((((((((.(((..((((........))))))))))))))).)))))).)))).))))))..)))))))).))).......

Structure

--cuauu   a        UU      C    G      uaccuuaacuuugauccguuucucuagauccauaucaccuau        a   uu    uuu 
       uug ggGGAAUG  GUCUGG UCGA Gacacu                                          auauaugu uua  guau   u
       ||| ||||||||  |||||| |||| ||||||                                          |||||||| |||  ||||    
       aac CCCCUUAC  CGGACC GGCU cugugg                                          uguguacg agu  caug   a
cgcuauu   c        UU      A    g      -----------------------------------------u        -   --    uuu 

Annotation confidence High

Genome context

gb|CP126662.1|: 20001701-20001860 [-]

Mature vvi-miR166c-5p

• Accession: MIMAT0055795
• Description: Vitis vinifera vvi-miR166c-5p mature miRNA
• Sequence: 12 - GGAAUGUUGUCUGGCUCGAGG - 32
• Evidence: experimental ; unknown

Mature vvi-miR166c-3p

• Accession: MIMAT0005664
• Description: Vitis vinifera vvi-miR166c-3p mature miRNA
• Sequence: 129 - UCGGACCAGGCUUCAUUCCCC - 149
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558