miRBase entry: vvi-MIR166c

Stem-loop vvi-MIR166c


Accession
MI0006509
Description
Vitis vinifera vvi-MIR166c precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
8 open access papers mention vvi-MIR166c
(17 sentences)

Sequence

2199909 reads, 147510 reads per million, 2 experiments
cuauuuugaggggaauguugucuggcucgaggacacuuaccuuaacuuugauccguuucucuagauccauaucaccuauauauauguauuauuguauuuuuauuuguacugagcauguguuggugucgUCGGACCAGGCUUCAUUCCCCccaauuaucgc
.....(((.((((((((..((((((.((((.((((((............((((..........))))............((((((((.(((..((((........))))))))))))))).)))))).)))).))))))..)))))))).))).......

Structure
--cuauu   a        uu      c    g      uaccuuaacuuugauccguuucucuagauccauaucaccuau        a   uu    uuu 
       uug ggggaaug  gucugg ucga gacacu                                          auauaugu uua  guau   u
       ||| ||||||||  |||||| |||| ||||||                                          |||||||| |||  ||||    
       aac CCCCUUAC  CGGACC GGCU cugugg                                          uguguacg agu  caug   a
cgcuauu   c        UU      A    g      -----------------------------------------u        -   --    uuu 


Annotation confidence Not enough data
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Genome context
chr15: 16978572-16978731 [-]

Database links

Mature vvi-miR166c

Accession MIMAT0005664
Description Vitis vinifera vvi-miR166c mature miRNA
Sequence 129 - UCGGACCAGGCUUCAUUCCCC - 149
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558