Stem-loop vvi-MIR169n

Accession

MI0007944

Description

Vitis vinifera vvi-MIR169n precursor miRNA

Literature search

8 open access papers mention vvi-MIR169n
(15 sentences)

Sequence

48152 reads, 321.0 reads per million, 192 experiments

ugaguggAAUAGAGCCAAGGAUGACUUGCcggcaacugcagcaaggcauaggguuuaacuggucauaacuggcAAGCAUCUGAGGCUCUAUUUCacccucu
...(((((((((((((..(((((.((((((((......(((..((((.....))))..))).......)))))))))))))..))))))))))))).....

Structure

--uga             AA     A        -caacug   ca    a 
     guggAAUAGAGCC  GGAUG CUUGCcgg       cag  aggc u
     |||||||||||||  ||||| ||||||||       |||  |||| a
     caCUUUAUCUCGG  UCUAC GAAcgguc       guc  uuug g
ucucc             AG     -        aauacug   aa    g 

Annotation confidence Medium

Genome context

gb|CP126658.1|: 16630566-16630666 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR169n

Mature vvi-miR169n-5p

• Accession: MIMAT0006549
• Description: Vitis vinifera vvi-miR169n-5p mature miRNA
• Sequence: 8 - AAUAGAGCCAAGGAUGACUUGC - 29
• Evidence: experimental ; Array [2]

Mature vvi-miR169n-3p

• Accession: MIMAT0055870
• Description: Vitis vinifera vvi-miR169n-3p mature miRNA
• Sequence: 74 - AAGCAUCUGAGGCUCUAUUUC - 94
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558