Stem-loop vvi-MIR396c

Accession

MI0007955

Description

Vitis vinifera vvi-MIR396c precursor miRNA

Literature search

5 open access papers mention vvi-MIR396c
(28 sentences)

Sequence

4990 reads, 332 reads per million, 2 experiments

uucugugaucUUCCACAGCUUUCUUGAACUGuuuuggaagccuuccacuuccaugcaauggaggaguucaaccaacagcucaggaaaguuguggaacauuacugagag
(((.(((((.(((((((((((((((((.((((((((((..(((.(((...........))))))..)))))..))))).))))))))))))))))).))))).)))..

Structure

--   u     c                 A     --     ag   u   cuuc 
  uuc gugau UUCCACAGCUUUCUUGA CUGuu  uugga  ccu cca    c
  ||| ||||| ||||||||||||||||| |||||  |||||  ||| |||    a
  gag cauua aagguguugaaaggacu gacaa  aacuu  gga ggu    u
ga   u     c                 c     cc     ga   -   aacg 

Annotation confidence Not enough data

Genome context

chr4: 5119591-5119698 [-]

Mature vvi-miR396c

• Accession: MIMAT0006560
• Description: Vitis vinifera vvi-miR396c mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUG - 31
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558