Stem-loop vvi-MIR159c

Accession

MI0006495

Description

Vitis vinifera vvi-MIR159c precursor miRNA

Literature search

5 open access papers mention vvi-MIR159c
(15 sentences)

Sequence

18802739 reads, 83417.0 reads per million, 226 experiments

uuuuggaguggagcuccuugaaguccaauagagggucuuacuggguagauugAGCUGCUGACUUAUGGAUCCCacagcccuaucccgucaauggggggcauuggauaggcuuguggcuugcauaucucaggagcugcauuauccaaguuuagauccuugUUUGGAUUGAAGGGAGCUCUAcaccucucuc
....((.((((((((((((..(((((((..((((((((.(((((((((..((((((.((((..((((.(..((((((.(((((((.(((.......)))...))))))).))))))..).))))..)))).)))).)))))))).)))..))))))))..)))))))..)))))))))))).))......

Structure

--uuuu  a            ga       ua        -u   -      au  -    G    CU    G UC      c       --c   aa 
      gg guggagcuccuu  aguccaa  gagggucu  acu ggguag  ug AGCU CUGA  UAUG A  CCacag ccuaucc   guc  u
      || ||||||||||||  |||||||  ||||||||  ||| ||||||  || |||| ||||  |||| |  |||||| |||||||   |||  g
      cc cAUCUCGAGGGA  UUAGGUU  uuccuaga  uga ccuauu  ac ucga gacu  auac u  gguguu ggauagg   cgg  g
cucucu  a            AG       Ug        uu   a      --  g    g    cu    g uc      c       uua   gg 

Annotation confidence Low

Genome context

gb|CP126664.1|: 3048148-3048337 [-]

Mature vvi-miR159c-5p

• Accession: MIMAT0055785
• Description: Vitis vinifera vvi-miR159c-5p mature miRNA
• Sequence: 53 - AGCUGCUGACUUAUGGAUCCC - 73
• Evidence: experimental ; unknown

Mature vvi-miR159c-3p

• Accession: MIMAT0005650
• Description: Vitis vinifera vvi-miR159c-3p mature miRNA
• Sequence: 160 - UUUGGAUUGAAGGGAGCUCUA - 180
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558