Stem-loop vvi-MIR169t

Accession

MI0006534

Description

Vitis vinifera vvi-MIR169t precursor miRNA

Literature search

8 open access papers mention vvi-MIR169t
(15 sentences)

Sequence

98512 reads, 673.0 reads per million, 206 experiments

aggguggaauCGAGUCAAGGAUGACUUGCCGauauauauuugcggaaggacuugcaugggccuuuagcuauguguaaccGGCAAGUUGACUUGACUCAGUuuggcccucu
(((((.((((.((((((((...(((((((((.(((((((..((.(((((.(((....)))))))).)).)))))))..)))))))))..)))))))).)))).)))))..

Structure

--     g    C        GAU         -a       uu  g     a   g 
  agggu gaau GAGUCAAG   GACUUGCCG  uauauau  gc gaagg cuu c
  ||||| |||| ||||||||   |||||||||  |||||||  || ||||| |||  
  ucccg uuUG CUCAGUUC   UUGAACGGc  augugua  cg uuucc ggg a
uc     g    A        -AG         ca       -u  a     -   u 

Annotation confidence High

Genome context

gb|CP126658.1|: 16649893-16650002 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from vvi-MIR169t

Mature vvi-miR169t-5p

• Accession: MIMAT0005689
• Description: Vitis vinifera vvi-miR169t-5p mature miRNA
• Sequence: 11 - CGAGUCAAGGAUGACUUGCCG - 31
• Evidence: experimental ; Array [2]

Mature vvi-miR169t-3p

• Accession: MIMAT0055818
• Description: Vitis vinifera vvi-miR169t-3p mature miRNA
• Sequence: 80 - GGCAAGUUGACUUGACUCAGU - 100
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558