Stem-loop vvi-MIR169b

Accession

MI0007940

Description

Vitis vinifera vvi-MIR169b precursor miRNA

Literature search

8 open access papers mention vvi-MIR169b
(16 sentences)

Sequence

16104 reads, 150.0 reads per million, 118 experiments

ggggucgaauUGAGCCAAGGAUGGCUUGCCGUcaucugcagcaagaguuggagacuuuuaacugugcgugcacGGUUAGUCAUCCUUGGCUCAUUuggcccuucu
((((((((((.(((((((((((((((.((((((((.(((((.(((((((...)))))))..))))).))).))))).)))))))))))))))))))))))))...

Structure

---          U               U     -   c     -c       g 
   ggggucgaau GAGCCAAGGAUGGCU GCCGU cau ugcag  aagaguu  
   |||||||||| ||||||||||||||| ||||| ||| |||||  ||||||| g
   ucccgguUUA CUCGGUUCCUACUGA UGGca gug guguc  uuuucag  
ucu          -               U     c   c     aa       a 

Annotation confidence High

Genome context

gb|CP126658.1|: 16515763-16515867 [+]

Mature vvi-miR169b-5p

• Accession: MIMAT0006545
• Description: Vitis vinifera vvi-miR169b-5p mature miRNA
• Sequence: 11 - UGAGCCAAGGAUGGCUUGCCGU - 32
• Evidence: experimental ; Array [2]

Mature vvi-miR169b-3p

• Accession: MIMAT0055866
• Description: Vitis vinifera vvi-miR169b-3p mature miRNA
• Sequence: 74 - GGUUAGUCAUCCUUGGCUCAUU - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558