Stem-loop vvi-MIR169y

Accession

MI0006522

Description

Vitis vinifera vvi-MIR169y precursor miRNA

Literature search

8 open access papers mention vvi-MIR169y
(17 sentences)

Sequence

103 reads, 56.0 reads per million, 41 experiments

cguuguuugguagCGAAGGAUGACUUGCCUACAGCCUccuuaagguuucaaaauaccgagcuugucuaccuuugaucaaaugauucaagaaacaaaagaaaagaaaggccauggcagccauccaucagagucaacaugagaaucauguucuauagaaauuggagucauucuugagaaugaacacgacacuauuagcuuggaaucuauaauguggUUUAUGGCAAGUCUCCUUGGCaccugauggccuc
.((((((.(((.((.(((((.((((((((...((((.(.((((((((........(((((((((((...(((.((((....)))).))).................(((.......))).((((........(((((((...)))))))..........)))).((((((....))))))....)))).....)))))))))))).))).).))))...))))))))))))).))))).))))))...

Structure

--c      u   a  G     U        UAC    U c   -     ucaaaaua       -----    uaccuuugaucaaaugauucaagaaacaaaagaaaagaaaggccauggcagcca    --ucagaguc       g 
   guuguu ggu gC AAGGA GACUUGCC   AGCC c uua agguu        ccgagcu     uguc                                                      ucca          aacauga  
   |||||| ||| || ||||| ||||||||   |||| | ||| |||||        |||||||     ||||                                                      ||||          ||||||| a
   cgguag cca CG UUCCU CUGAACGG   UUgg g aau ucuaa        gguucga     acag                                                      aggu          uuguacu  
cuc      u   -  G     -        UAU    u u   a     --------       uuauc    ---------------------------------cacaaguaagaguucuuacug    uaaagauauc       a 

Annotation confidence Medium

Genome context

gb|CP126648.1|: 26802950-26803197 [+]

Mature vvi-miR169y-5p

• Accession: MIMAT0005677
• Description: Vitis vinifera vvi-miR169y-5p mature miRNA
• Sequence: 14 - CGAAGGAUGACUUGCCUACAGCCU - 37
• Evidence: experimental ; Array [2]

Mature vvi-miR169y-3p

• Accession: MIMAT0055807
• Description: Vitis vinifera vvi-miR169y-3p mature miRNA
• Sequence: 215 - UUUAUGGCAAGUCUCCUUGGC - 235
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558