Stem-loop vvi-MIR399e

Accession

MI0006575

Description

Vitis vinifera vvi-MIR399e precursor miRNA

Literature search

4 open access papers mention vvi-MIR399e
(10 sentences)

Sequence

56425 reads, 567.0 reads per million, 122 experiments

gcauauuacaGGGCAAAUUAUCUUUUGGCAGGcagccacuuagagacacagccaagccaugcauucuuguagugugcccucUGCCAAAGGAGAUUUGCCCGGcaauucuucu
..........(((((((((.((((((((((((..((((((..((((....((........))..))))..)))).))..)))))))))))))))))))))............

Structure

--gcauauuaca         A            ca  -    ua    caca  caa 
            GGGCAAAUU UCUUUUGGCAGG  gc cacu  gaga    gc   g
            ||||||||| ||||||||||||  || ||||  ||||    ||    
            CCCGUUUAG AGGAAACCGUcu  cg guga  uucu    cg   c
ucuucuuaacGG         -            cc  u    ug    --ua  uac 

Annotation confidence High

Genome context

gb|CP126657.1|: 8092352-8092463 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from vvi-MIR399e

Mature vvi-miR399e-5p

• Accession: MIMAT0055858
• Description: Vitis vinifera vvi-miR399e-5p mature miRNA
• Sequence: 11 - GGGCAAAUUAUCUUUUGGCAGG - 32
• Evidence: experimental ; unknown

Mature vvi-miR399e-3p

• Accession: MIMAT0005730
• Description: Vitis vinifera vvi-miR399e-3p mature miRNA
• Sequence: 82 - UGCCAAAGGAGAUUUGCCCGG - 102
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467