Stem-loop vvi-MIR393a

Accession

MI0007952

Description

Vitis vinifera vvi-MIR393a precursor miRNA

Literature search

4 open access papers mention vvi-MIR393a
(13 sentences)

Sequence

135866 reads, 2517.0 reads per million, 222 experiments

gguggacaguUCCAAAGGGAUCGCAUUGAUCccaugguuaucuuccaccucucuuaccagacuaucauaacaaagucuggccuuuuucccauuggAUCAUGCUAUCCCUUAGGAACUcuccaucag
((((((.((((((.(((((((.((((.(((((.((((...................(((((((..........)))))))........)))).))))))))).))))))).)))))).))))))..

Structure

--      c      A       C    U     c    uuaucuuccaccucucuua       auca 
  ggugga aguUCC AAGGGAU GCAU GAUCc augg                   ccagacu    u
  |||||| |||||| ||||||| |||| ||||| ||||                   |||||||     
  cuaccu UCAAGG UUCCCUA CGUA CUAgg uacc                   ggucuga    a
ga      c      A       U    -     u    -----------cuuuuucc       aaca 

Annotation confidence High

Genome context

gb|CP126663.1|: 22191569-22191694 [-]

Mature vvi-miR393a-5p

• Accession: MIMAT0006557
• Description: Vitis vinifera vvi-miR393a-5p mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUC - 31
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR393a-3p

• Accession: MIMAT0055877
• Description: Vitis vinifera vvi-miR393a-3p mature miRNA
• Sequence: 96 - AUCAUGCUAUCCCUUAGGAACU - 117
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558