Stem-loop vvi-MIR399b

Accession

MI0006574

Description

Vitis vinifera vvi-MIR399b precursor miRNA

Literature search

5 open access papers mention vvi-MIR399b
(11 sentences)

Sequence

7730 reads, 62.0 reads per million, 160 experiments

aucaaucaUAGGGCACCUCUUUCUUGGCAggcacuggcuccuauauaugaauauacauagcuuagcugcaguaaaaagaugugacuUGCCAAAGGAGAGUUGCCCUGugacugcuuc
..((.((((((((((.((((((.(((((((((((..((..(((..((((......))))...)))..))...........))).)))))))).)))))).)))))))))).))....

Structure

--au  a          C      C        -   ---------ug  uc   -ua    aa 
    ca ucaUAGGGCA CUCUUU UUGGCAgg cac           gc  cua   uaug  u
    || |||||||||| |||||| |||||||| |||           ||  |||   ||||   
    gu aguGUCCCGU GAGAGG AACCGUuc gug           cg  gau   auac  a
cuuc  c          U      A        a   uagaaaaauga  uc   ucg    au 

Annotation confidence High

Genome context

gb|CP126663.1|: 20403247-20403363 [-]

Mature vvi-miR399b-5p

• Accession: MIMAT0055857
• Description: Vitis vinifera vvi-miR399b-5p mature miRNA
• Sequence: 9 - UAGGGCACCUCUUUCUUGGCA - 29
• Evidence: experimental ; unknown

Mature vvi-miR399b-3p

• Accession: MIMAT0005729
• Description: Vitis vinifera vvi-miR399b-3p mature miRNA
• Sequence: 87 - UGCCAAAGGAGAGUUGCCCUG - 107
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558