Stem-loop vvi-MIR160a

Accession

MI0006496

Description

Vitis vinifera vvi-MIR160a precursor miRNA

Literature search

5 open access papers mention vvi-MIR160a
(14 sentences)

Sequence

17613 reads, 93.0 reads per million, 174 experiments

gggguugaucUGCCUGGCUCCCUGAAUGCCAUCuaagaagcuugucaagguuguugacucucuuccuaguUGGCAUCAGAGGAGUCAUGCAggccccaacauu
(((((....((((.(((((((((((.(((((.(((.((((...(((((.....)))))...)))).))).))))))))).))))))).)))))))))......

Structure

------     ugau    C       -    A     U   a    cuu     g 
      ggggu    cUGC UGGCUCC CUGA UGCCA Cua gaag   gucaa g
      |||||    |||| ||||||| |||| ||||| ||| ||||   ||||| u
      ccccg    gACG ACUGAGG GACU ACGGU gau cuuc   caguu u
uuacaa     ----    U       A    -     u   c    ucu     g 

Annotation confidence Medium

Genome context

gb|CP126659.1|: 9923469-9923571 [-]

Mature vvi-miR160a-5p

• Accession: MIMAT0005651
• Description: Vitis vinifera vvi-miR160a-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGAAUGCCAUC - 33
• Evidence: experimental ; Array [2], Illumina [2]

Mature vvi-miR160a-3p

• Accession: MIMAT0055786
• Description: Vitis vinifera vvi-miR160a-3p mature miRNA
• Sequence: 71 - UGGCAUCAGAGGAGUCAUGCA - 91
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558