Stem-loop vvi-MIR169x

Accession

MI0007949

Description

Vitis vinifera vvi-MIR169x precursor miRNA

Literature search

8 open access papers mention vvi-MIR169x
(19 sentences)

Sequence

61946 reads, 379.0 reads per million, 193 experiments

gucucgucuggUAGCCAAGGAUGACUUGCCUaaauccaccagguuucaaaacacugaauguaauuauccacaaagcgauuccguggucuuuaggCAGUCAUUCCUUCGGCUAAACUgaccggcuc
(((..(((...(((((((((((((((.(((((((.((((..((..((.......((.(((....))).))......))..))))))..)))))))))))).))))).)))))....))).)))..

Structure

--   uc   -ugg     -     -     U       -u    ca  uu  aaaacac  a   u 
  guc  guc    UAGCC AAGGA UGACU GCCUaaa  ccac  gg  uc       ug aug a
  |||  |||    ||||| ||||| ||||| |||||||  ||||  ||  ||       || |||  
  cgg  cag    AUCGG UUCCU ACUGA Cggauuu  ggug  cc  ag       ac uau a
cu   -c   UCAA     C     U     -       cu    --  uu  -cgaaac  c   u 

Annotation confidence Medium

Genome context

gb|CP126664.1|: 823489-823613 [-]

Mature vvi-miR169x-5p

• Accession: MIMAT0006554
• Description: Vitis vinifera vvi-miR169x-5p mature miRNA
• Sequence: 12 - UAGCCAAGGAUGACUUGCCU - 31
• Evidence: experimental ; Array [2]

Mature vvi-miR169x-3p

• Accession: MIMAT0055875
• Description: Vitis vinifera vvi-miR169x-3p mature miRNA
• Sequence: 95 - CAGUCAUUCCUUCGGCUAAACU - 116
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558