Stem-loop vvi-MIR319e

Accession

MI0007951

Description

Vitis vinifera vvi-MIR319e precursor miRNA

Literature search

7 open access papers mention vvi-MIR319e
(27 sentences)

Sequence

38 reads, 3 reads per million, 2 experiments

ugcagaaauggggguuccuuugcagcccaaaacaacuccaucgcugaagaagaugaugaacuucaugcuccuuguUUUGGACUGAAGGGAGCUCCUaguucuucucu
...((((.(((((((((((((.(((.(((((((((.......(((((((...........))))).))...))))))))).)))))))))))))))).)))).....

Structure

--ugc    a             g   c         cuccauc  -     aaga 
     agaa uggggguuccuuu cag ccaaaacaa       gc ugaag    u
     |||| ||||||||||||| ||| |||||||||       || |||||    g
     ucuu aUCCUCGAGGGAA GUC GGUUUuguu       cg acuuc    a
ucucu    g             -   A         ----ccu  u     aagu 

Annotation confidence Not enough data

Genome context

chr11: 4317224-4317330 [+]

Mature vvi-miR319e

• Accession: MIMAT0006556
• Description: Vitis vinifera vvi-miR319e mature miRNA
• Sequence: 76 - UUUGGACUGAAGGGAGCUCCU - 96
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558